RICE CRISPR Transcription factor database - prototype

Gene details: BGIOSGA006859

Data typeValue
FamilyC2C2-GATA
RAP IDBGIOSGA006859
Indica UniProt IDA2X2I3
Japonica RAP IDOs02t0220400-01
Qtaro traitDwarfism. Tillering. Chlorophyll content. Grain filling rate.
Japonica UniProtQ6YW48
Japonica UniProt FunctionFUNCTION: Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
OryzaBaseTrait Coloration - Chlorophyll, Tolerance and resistance - Stress tolerance, Character as QTL - Yield and productivity, Other GO:0003682 - chromatin binding, GO:0005634 - nucleus, GO:0005667 - transcription factor complex, GO:0006366 - transcription from RNA polymerase II promoter, GO:0008270 - zinc ion binding, GO:0009414 - response to water deprivation, GO:0009416 - response to light stimulus, GO:0009507 - chloroplast, GO:0009646 - response to absence of light, GO:0009658 - chloroplast organization, GO:0009735 - response to cytokinin stimulus, GO:0009739 - response to gibberellin stimulus, GO:0010260 - organ senescence, GO:0019252 - starch biosynthetic process, GO:0030154 - cell differentiation, GO:0045944 - positive regulation of transcription from RNA polymerase II promoter TO:0000011 - nitrogen sensitivity, TO:0000075 - light sensitivity, TO:0000128 - harvest index, TO:0000166 - gibberellic acid sensitivity, TO:0000167 - cytokinin sensitivity, TO:0000201 - panicle color, TO:0000207 - plant height, TO:0000276 - drought tolerance, TO:0000346 - tiller number, TO:0000495 - chlorophyll content, TO:0002661 - seed maturation, TO:0002715 - chloroplast development trait PO:0007632 - seed maturation stage
TAIR Ortho IDAT4G26150.1
TAIR Ortho FunctionEncodes a member of the GATA factor family of zinc finger transcription factors. Modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression.
TAIR Germplasm Phenotype

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This prototype has been developed by Andy Jones, in collaboration with the UK Rice Research Consortium.

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